PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000464.1_g230.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 240aa    MW: 27886.3 Da    PI: 8.053
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000464.1_g230.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13e-161057148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WT eEd+ll ++++ +G g+W+ ++ + g++R++k+c++rw++yl
  Pav_sc0000464.1_g230.1.mk 10 KGAWTGEEDDLLRQCIENHGEGNWHQVPYKAGLRRCRKSCRLRWLNYL 57
                               79********************************************97 PP
2Myb_DNA-binding44.83e-1463106146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                rg + ++E +l+++++k+lG++ W++Ia +++ gRt++++k++w++
  Pav_sc0000464.1_g230.1.mk  63 RGDFMEDEVDLIIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNT 106
                                678889****************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MEGYNLGVRK GAWTGEEDDL LRQCIENHGE GNWHQVPYKA GLRRCRKSCR LRWLNYLKPN  60
IKRGDFMEDE VDLIIRLHKL LGNRWSLIAG RLPGRTANDV KNYWNTRLRM DSRLKKVKDK  120
PQETIKTTVI RPQPRSFIKS SNCLSSKEPH IQTVENCSTP SQTSPSTKNG NDWWETFLDD  180
EDAFERATCY GLALEEEGFT SFWVDDMPQS KRQCANVSEE GLGRGDFSFN VDLWNHSKQE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-60MYB family protein