PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000465.1_g1280.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 174aa    MW: 19960.3 Da    PI: 3.9327
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000465.1_g1280.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.81.3e-08243849
                                HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                      SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                n + tfskRr+g++  A  +S   + e  vi++ss++k y +
  Pav_sc0000465.1_g1280.1.br  2 NMKATFSKRRKGLFREAANVSSSSGSEMVVIVLSSENKPYVF 43
                                6678********************************997766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    
MNMKATFSKR RKGLFREAAN VSSSSGSEMV VIVLSSENKP YVFGNPSVDS VLDRFLSEQD  60
SCTLDLEEEE KDEEEDEGDE DEEEEEDDDD DDDDDDDEDD DHEGNQEEDD IDVEKLQVLL  120
DKHKPNKHAG VDELKKYKAY VEGIKKRVER KMDSLGIKLD NSSEIGYARE ERDQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-15M-type_MADS family protein