PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000467.1_g1030.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 333aa    MW: 36263.3 Da    PI: 4.5571
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000467.1_g1030.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331.1e-10144186855
                                 HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  ErrRR r+++++  Lr+l+P+      +K++Ka+i+  Av Y+++Lq
  Pav_sc0000467.1_g1030.1.mk 144 SERRRRGRMKERLYALRSLVPNI-----TKMDKASIVGDAVLYVQDLQ 186
                                 6*********************7.....7******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MDAHGNHLGG HNINDFELQD LIDDANFDQF IDLIRGQNED PVASFDCDLM INGCFDDYNL  60
FCPASTTPGV VFGFNDAVAS DPSASFLGTL SDPSAPLLTT LPNFDGEMKG GEEDHNGEDS  120
SGTTTTTTTT NKRQKVDRSR TLVSERRRRG RMKERLYALR SLVPNITKMD KASIVGDAVL  180
YVQDLQKQAK KLKAEIVSLE ASLAGADDHE GYQDGSTENP SKNKVTNNSN LVSKGIIQID  240
VSQVEEKGFY VKVACNKGGG VAAALYKALE SFTSFNVQSS NLNTVSTDRF ELTLALNVKE  300
CEHDIINLPN LKLWVTGAFL NQGFELASGF SAQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.17e-76bHLH family protein