PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000467.1_g220.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 248aa    MW: 27446.5 Da    PI: 5.1158
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000467.1_g220.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.82.4e-1237741350
                               HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                     SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                               +++R  ++ K A+ELS+LCd+ v+v+ ++ + ++ +++
  Pav_sc0000467.1_g220.1.mk 37 LARRMSTLKKMASELSILCDVAVCVVAVGADSEIETWP 74
                               56788888888**************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MAPPQLKSKK PKKMKMKMKP QVLKFDANGG SVLKPALARR MSTLKKMASE LSILCDVAVC  60
VVAVGADSEI ETWPENQQDA KSILLKHKNL GKLGKKIEKG SFSAGKSTDY SFLDTMLEGL  120
NERIGVVMMR DGVTNTRTTC TCSFMEFYEN IMGTSVLTDQ QQSMLLVDQV PHHQQEDYCT  180
TNSDGFYLDD LHIAAPAPTL SNIDDYVSWL LDYHNDIGLM EDYIQFCDSD LAPLPPAAAA  240
FFIAATSD