PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000480.1_g870.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 366aa MW: 41348.9 Da PI: 7.7497

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000480.1_g870.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.9	1.6e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++++++ G+g +W + +++ g++R++k+c++rw++yl Pav_sc0000480.1_g870.1.mk 14 KGPWSPEEDSKLKEYIEKQGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	39.2	1.7e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd ++ +++ G++ W+ Ia+ ++ gRt++++k++w++ Pav_sc0000480.1_g870.1.mk 69 GEFSDEEDRIICSLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDSKLKEYIE KQGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FSDEEDRIIC SLFASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGM 120 HMAPPSHHHH HHQRNSLKPP PFPSSSHHNY QNQPLIPSQP LSSLFKDLSS TYNRSFSSGF 180 EIPHLSMTSN NFSNTTTNSS LFPTQECLVG SMQYNNYPVK KNSNQNNLLM FGSEGSCSTS 240 SDGSCNQISY DRESNIKQEE MVFQSFDQDQ NNQRFMMLNY GNNNSGCSTG SAGHDHHHVI 300 NQWCERPDGF DHLGAENTLG YCDLEDVKQL ISGGNNLNIS VNGSKSNSLF SNVDENKTEE 360 KVMYFY

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDSKLKEYIE KQGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRIIC SLFASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGM  120
HMAPPSHHHH HHQRNSLKPP PFPSSSHHNY QNQPLIPSQP LSSLFKDLSS TYNRSFSSGF  180
EIPHLSMTSN NFSNTTTNSS LFPTQECLVG SMQYNNYPVK KNSNQNNLLM FGSEGSCSTS  240
SDGSCNQISY DRESNIKQEE MVFQSFDQDQ NNQRFMMLNY GNNNSGCSTG SAGHDHHHVI  300
NQWCERPDGF DHLGAENTLG YCDLEDVKQL ISGGNNLNIS VNGSKSNSLF SNVDENKTEE  360
KVMYFY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	2e-77	MYB family protein