PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000481.1_g070.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NF-YA
Protein Properties Length: 111aa    MW: 12327.7 Da    PI: 10.4099
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000481.1_g070.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.35.3e-331672158
                  CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                               +ep++VNaKQy++Il+RRq+Rak+e+e+k   ksrkpylheSRh+hAlrR+Rg+gGrF
  Pav_sc0000481.1_g070.1.mk 16 EEPVFVNAKQYHGILRRRQSRAKAESENKA-LKSRKPYLHESRHQHALRRARGCGGRF 72
                               69***************************9.9*************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    
MGIQQAGVPL PSDAVEEPVF VNAKQYHGIL RRRQSRAKAE SENKALKSRK PYLHESRHQH  60
ALRRARGCGG RFLNAKKNDN QQDEMSSGDK SQPNINLNSD KSELASSDGT S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.11e-54NF-YA family protein