PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000481.1_g080.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 848aa    MW: 92981.8 Da    PI: 6.2114
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000481.1_g080.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-182179357
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Pav_sc0000481.1_g080.1.mk 21 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 79
                               6789*****************************************************97 PP
2START170.21.3e-531703762203
                                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEE CS
                      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevi 85 
                                +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++l  i
  Pav_sc0000481.1_g080.1.mk 170 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRLSWFRDCRCHDVLSLI 252
                                68999*****************************************************.8999999999*************** PP

                                CTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEE CS
                      START  86 ssg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghsk 163
                                  g  g+++lm+++++a+++l++ Rdf+++Ry+ +l++g++v++++S++s +  p+   s+s+vRae+lpSg+li+p+++g+s 
  Pav_sc0000481.1_g080.1.mk 253 PAGngGTIELMYMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVVCERSLTSSTGGPTgppSASFVRAEMLPSGYLIRPCEGGGSI 336
                                *9999**********************************************99999999************************* PP

                                EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXX CS
                      START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrq 203
                                + +v+hvdl++++++++lrsl++s+ + ++k++ ++l++ 
  Pav_sc0000481.1_g080.1.mk 337 INIVDHVDLDAWSVPEVLRSLYESSKILAQKMTISALRHI 376
                                **********************************999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 848 aa     Download sequence    
MALVMNRDSP GSSSKQMDSS KYVRYTPEQV EALERVYSEC PKPSSLRRQQ LIRECPILSN  60
IEPKQIKVWF QNRRCREKQR KESSRLQTVN RKLTAMNKLL MEENDRLQKQ VSHLVYENGF  120
MRQQLHSASG TTTDNSCESV VMSGQHQQQQ NPTPQHPQRD ANNPAGLLAI AEETLAEFLS  180
KATGTAVDWV QMIGMKPGPD SIGIVAVSRN CSGVAARACG LVSLEPTKVA EILKDRLSWF  240
RDCRCHDVLS LIPAGNGGTI ELMYMQTYAP TTLAAARDFW TLRYTTSLED GSLVVCERSL  300
TSSTGGPTGP PSASFVRAEM LPSGYLIRPC EGGGSIINIV DHVDLDAWSV PEVLRSLYES  360
SKILAQKMTI SALRHIRQIA QETSGEIQYG GGRQPAVLRT FCQRLCRYAL QDLGGFNDAV  420
NGFADDGWSL MGSDGVEDVT ITINSSPNKF LGSQYNASIF PTFGGGVLCA KASMLLQSVP  480
PALLVRFLRE HRSEWADYGV DAYSAACLKA SPYAVPCARP GGFPSSQVIL PLAQTVENEE  540
FLEVVRLEGH AFSPEDVALA RDMYLLQLCS GVDENAVGSC AQLVFAPIDE SFADDAPLLP  600
SGFHDGPTAN RTLDLASTLE VGPSGSRPVN EADGNSYNLR SVLTIAFQFT FENHLRDNVA  660
AMARQYVRSV VSSVQRVAMA IAPSRLSSQM VPKPLPGSPE AHTLARWICR SYRIHTGAEL  720
FRVDSPSGDA VLKQLWHHSD AIMCCSVKTN ASPVFTFANQ AGLDMLETTL VALQDIMLDK  780
ILDEAGRKIL CSEFSKIMQQ GFAYLPAGLC ASSMGRPVSY DQAVAWKVVN DDDSNHCLAF  840
MFMSWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein