PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000488.1_g110.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

CO-like

Protein Properties

Length: 418aa MW: 45160.3 Da PI: 5.4896

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000488.1_g110.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.2	5.2e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C+++ +lC +C + H+ H++ Pav_sc0000488.1_g110.1.mk 4 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44 7*****************************65677777766 PP
2	zf-B_box	24.2	6.8e-08	46	89	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 C++++++++ C++ ++ lC++C +H g H++++ Pav_sc0000488.1_g110.1.mk 46 LLCERCNSQPALVRCTEERVSLCQNCDWMGH-GtstsasaHKRQT 89 57*****************************.5578888888765 PP
3	CCT	59.4	1.3e-20	359	402	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+k RkF+K++rY+sRKa+A+ R+RvKGrF k+ Pav_sc0000488.1_g110.1.mk 359 RSNAVMRYKEKKKARKFDKRVRYASRKARADVRKRVKGRFIKAG 402 899*************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPALVRC 60 TEERVSLCQN CDWMGHGTST SASAHKRQTL NCYSGCPSAS ELSSIWSFVL DLPAAGESAC 120 EQEMGLMSIA ENSTGSAWSP PESNTKQNAS GTVEVNGVRS DDKSSVLVGS SSVPELNPAT 180 HVVGQQGGSE NATLPKLFCH GTKGPVIPED DDLYDDFDMD EMDLNLENYE ELFGVSLNHS 240 EELFKNGGID SLFGAKNMSK GNSNYQDVGA AEGSSVGLVN ALQPACSNAA SADSVMSTKT 300 DPIICFPAKQ AQSNLSFSGV TGESSAGDCQ DCGASSMLLM GEPPWCPPCP ESSMQSANRS 360 NAVMRYKEKK KARKFDKRVR YASRKARADV RKRVKGRFIK AGEAYDYDPL NQARTRSY

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPALVRC  60
TEERVSLCQN CDWMGHGTST SASAHKRQTL NCYSGCPSAS ELSSIWSFVL DLPAAGESAC  120
EQEMGLMSIA ENSTGSAWSP PESNTKQNAS GTVEVNGVRS DDKSSVLVGS SSVPELNPAT  180
HVVGQQGGSE NATLPKLFCH GTKGPVIPED DDLYDDFDMD EMDLNLENYE ELFGVSLNHS  240
EELFKNGGID SLFGAKNMSK GNSNYQDVGA AEGSSVGLVN ALQPACSNAA SADSVMSTKT  300
DPIICFPAKQ AQSNLSFSGV TGESSAGDCQ DCGASSMLLM GEPPWCPPCP ESSMQSANRS  360
NAVMRYKEKK KARKFDKRVR YASRKARADV RKRVKGRFIK AGEAYDYDPL NQARTRSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	1e-117	CO-like family protein