PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000500.1_g220.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Whirly
Protein Properties Length: 119aa    MW: 13191.5 Da    PI: 6.0902
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000500.1_g220.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly53.26.4e-171403574
                     Whirly 35 llelanataerkydWekkqsfalsatevaelvdlaskesc 74
                               +l++++a++erkydWek+q+falsatev++l++l++++s 
  Pav_sc0000500.1_g220.1.br  1 MLKFTPAIGERKYDWEKRQVFALSATEVGSLISLGPNDSF 40
                               89***********************************983 PP
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    
MLKFTPAIGE RKYDWEKRQV FALSATEVGS LISLGPNDSF TKPWSKVVSD GGRDHHDQGG  60
MNEWAMLDRL VTSHLGNDQD SSSKGARYDQ DANAAASSVT QINNHLSLRG EMDFWGYGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.12e-16NAC family protein