PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000500.1_g590.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 96aa    MW: 11022.5 Da    PI: 7.5714
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000500.1_g590.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.31.9e-0646571627
                               TTTTT-SS-SSS CS
                    zf-CCCH 16 kyGdrCkFaHgp 27
                               +yG+rC+FaHg+
  Pav_sc0000500.1_g590.1.mk 46 PYGERCRFAHGE 57
                               8*********96 PP
2zf-CCCH22.71.8e-076791226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                               kt  C++f+    C +G+rC+F+H+
  Pav_sc0000500.1_g590.1.mk 67 KTTQCKHFHSISGCDFGNRCHFIHD 91
                               8999********************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    
MLQPNMGLGP MAMDPAQAPN VHMPPPEITN YKTQLYDKWS TPEGYPYGER CRFAHGEAEW  60
KKQPQHKTTQ CKHFHSISGC DFGNRCHFIH DGPCHQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.24e-12C3H family protein