PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000502.1_g710.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 204aa    MW: 23309.2 Da    PI: 8.6592
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000502.1_g710.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.83.2e-24957149
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                               k+ien   rqvtf+kRr+g+lKKA+ELSvLCda++ + ifss+gkl+e 
  Pav_sc0000502.1_g710.1.mk  9 KKIENPVHRQVTFCKRRAGLLKKAKELSVLCDADIGIFIFSSHGKLFEL 57
                               68********************************************996 PP
2K-box60.38e-2184174999
                      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                                + e+++   ++e++ Lk+eie Lq+ +R + G + e+++l eLq Le++Le  + ++Rs K+++l+++i+ l++ e  l  +nk
  Pav_sc0000502.1_g710.1.mk  84 AIETQTLDAKKEINLLKQEIEILQKGLRYMFGGGAETMTLDELQVLEKHLEVWIYHVRSAKMDVLFREIQLLRNSEGILTAANK 167
                                4567777899************************************************************************** PP

                      K-box  93 aLrkkle 99 
                                +L+ k+ 
  Pav_sc0000502.1_g710.1.mk 168 YLQDKII 174
                                ****986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MARGKVQMKK IENPVHRQVT FCKRRAGLLK KAKELSVLCD ADIGIFIFSS HGKLFELATK  60
GNMQGLIERY MKMKPTRVSQ ADQAIETQTL DAKKEINLLK QEIEILQKGL RYMFGGGAET  120
MTLDELQVLE KHLEVWIYHV RSAKMDVLFR EIQLLRNSEG ILTAANKYLQ DKIIEENIGV  180
TNITPMASDN PYPLTIPDDD IFQI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.19e-79MIKC_MADS family protein