PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000506.1_g180.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

HSF

Protein Properties

Length: 412aa MW: 46580.9 Da PI: 5.2288

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000506.1_g180.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.5	1.2e-34	14	105	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 Fl+k+y++++d+++++++sws++++sf+v+++ efa+++Lpk+Fkh+nf+SF+RQLn+YgF+k++ e+ weF+++ Pav_sc0000506.1_g180.1.mk 14 FLSKTYDMVDDASTDSIVSWSASNKSFIVWNPPEFARDLLPKFFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANDD 88 9******************999************************************9998.........*** PP XXXXXXXXXXXXXXXXX CS HSF_DNA-bind 86 Fkkgkkellekikrkks 102 F +g+ +l+++i+r+k Pav_sc0000506.1_g180.1.mk 89 FIRGQPHLMKNIHRRKP 105 ************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MDEVQGGASS LPPFLSKTYD MVDDASTDSI VSWSASNKSF IVWNPPEFAR DLLPKFFKHN 60 NFSSFIRQLN TYGFRKIDPE QWEFANDDFI RGQPHLMKNI HRRKPVHSHS LQNLQVQGNG 120 TSLSESERQS MKDEIERLKH EKERLGVELQ RHEQERQGLE LQMQFLKERL QHMERQQQTM 180 AGFMARVLQK PGIASNPVPQ LEIHGRKRRL PRIGWSYDEA SNGNNQVAGS QAGIRENADM 240 EKLEQLESFL TFWEDTIFDV GETHIQVVSN VELDESTSCV ESAAISSIQL NVDAQPKSPG 300 IDMNSEPAVV VAPEPAAAVP PEPASSKQQS SKEQTSGITA SAPTGVNDVF WEHFLTENPG 360 SVEAQEVQLE KRDSDGRKNE SKPGDHGKLW WNMRNVNNLT EQMGHLTPVE KT

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MDEVQGGASS LPPFLSKTYD MVDDASTDSI VSWSASNKSF IVWNPPEFAR DLLPKFFKHN  60
NFSSFIRQLN TYGFRKIDPE QWEFANDDFI RGQPHLMKNI HRRKPVHSHS LQNLQVQGNG  120
TSLSESERQS MKDEIERLKH EKERLGVELQ RHEQERQGLE LQMQFLKERL QHMERQQQTM  180
AGFMARVLQK PGIASNPVPQ LEIHGRKRRL PRIGWSYDEA SNGNNQVAGS QAGIRENADM  240
EKLEQLESFL TFWEDTIFDV GETHIQVVSN VELDESTSCV ESAAISSIQL NVDAQPKSPG  300
IDMNSEPAVV VAPEPAAAVP PEPASSKQQS SKEQTSGITA SAPTGVNDVF WEHFLTENPG  360
SVEAQEVQLE KRDSDGRKNE SKPGDHGKLW WNMRNVNNLT EQMGHLTPVE KT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18880.1	1e-127	HSF family protein