PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000522.1_g060.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 501aa MW: 56166.7 Da PI: 9.1964

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000522.1_g060.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.1	2.7e-07	394	409	12	27
TS--TTTTT-SS-SSS CS zf-CCCH 12 tGtCkyGdrCkFaHgp 27 tGtCk+G++CkF+H++ Pav_sc0000522.1_g060.1.mk 394 TGTCKFGPNCKFNHPR 409 8*************96 PP
2	zf-CCCH	25.9	1.7e-08	439	460	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C ++ tGtC++G++CkF+H++ Pav_sc0000522.1_g060.1.mk 439 CWSYLNTGTCNFGPNCKFNHPR 460 667999**************96 PP
3	zf-CCCH	21	5.7e-07	470	494	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C ++ +G+Ck G+ CkF H+ Pav_sc0000522.1_g060.1.mk 470 GENICTQYSSYGICKSGPACKFDHP 494 5679********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence
MLPAPIGLPN PDVRPNAELS DLDLAILEEI RKLNALIDKI RKLDPALRDK IRKFDPDRKE 60 TDGGGGENKN ENGGEVEMKV GEERSRSQHY PRQSEERDGG GGENKNENGG QVEKKVDDER 120 SRRYHYPVRP PGAGDSSHNL KTGTHKFGSN CKFNRTRKDD VLPPNHGDPD CDLATLREIL 180 RHKTALLGII RKLDGGLFER DGGGGENKNE NGGEVQKKVD EERSRRHHYP VRPPGAGDSS 240 HNLKTGTHQF GSNCKVRTSA HNTVRMAFAI LGQLVNLTIR QYDLPFCDST TTNGAGTSES 300 INRTDATISR RLLTQSPVML PAAAVRVLLP VSVSAIYVIY RYLRSRRQTE ISPNTSNNDV 360 VPPPNSGNND VVPYPELSDR DRTILEEILK DNHTGTCKFG PNCKFNHPRI TTKNNQSEER 420 DKERSRIRHY PVRFEAGDCW SYLNTGTCNF GPNCKFNHPR RRKNRKNNQG ENICTQYSSY 480 GICKSGPACK FDHPVLSTFL L

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence

MLPAPIGLPN PDVRPNAELS DLDLAILEEI RKLNALIDKI RKLDPALRDK IRKFDPDRKE  60
TDGGGGENKN ENGGEVEMKV GEERSRSQHY PRQSEERDGG GGENKNENGG QVEKKVDDER  120
SRRYHYPVRP PGAGDSSHNL KTGTHKFGSN CKFNRTRKDD VLPPNHGDPD CDLATLREIL  180
RHKTALLGII RKLDGGLFER DGGGGENKNE NGGEVQKKVD EERSRRHHYP VRPPGAGDSS  240
HNLKTGTHQF GSNCKVRTSA HNTVRMAFAI LGQLVNLTIR QYDLPFCDST TTNGAGTSES  300
INRTDATISR RLLTQSPVML PAAAVRVLLP VSVSAIYVIY RYLRSRRQTE ISPNTSNNDV  360
VPPPNSGNND VVPYPELSDR DRTILEEILK DNHTGTCKFG PNCKFNHPRI TTKNNQSEER  420
DKERSRIRHY PVRFEAGDCW SYLNTGTCNF GPNCKFNHPR RRKNRKNNQG ENICTQYSSY  480
GICKSGPACK FDHPVLSTFL L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	459	463	PRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	5e-15	C3H family protein