PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000522.1_g080.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 172aa    MW: 18734.3 Da    PI: 4.9412
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000522.1_g080.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-06117133926
                                GGGTS--TTTTT-SS-SS CS
                    zf-CCCH   9 fartGtCkyGdrCkFaHg 26 
                                fa  G+Ck+ + CkF H+
  Pav_sc0000522.1_g080.1.mk 117 FAM-GICKFEPACKFDHP 133
                                555.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MLPAARLLLP VSVSALYALY ALYKYLRSGR VTELSEDIAV PLNPDNNDVV SRQPSHLDPA  60
ILEEIRKFDP AVLDEFRKFD PALLDELGLV SLAPIASLIT LVEGKPIRIR TFAHITFAMG  120
ICKFEPACKF DHPLNITSST TSGPDHQHSF SDSATTNGAG SDTDATSQPQ PM