PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000522.1_g090.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 206aa    MW: 22872 Da    PI: 3.939
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000522.1_g090.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.43.7e-11139163327
                                S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                + +C +++r+G+Ck+G+ CkF H++
  Pav_sc0000522.1_g090.1.mk 139 QNICTYYSRYGICKFGPVCKFDHSE 163
                                568********************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    
MEVSEAISVP PNLDANNNHH IDEHHQPSHS ELGFLPSSPD PDPAPSDFLD ELQKLDLKEK  60
EEDHLDEFQK LDLKEEDAKE EEDEEDVEKK SSNGRETENE NENENESERQ SEQSDGGENQ  120
SEDGGVPSQN TEWNGYQDQN ICTYYSRYGI CKFGPVCKFD HSENITSSTT SGPDHQLPFS  180
DSATTNGTGT AGSRSGTDAI SQLQPV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-11C3H family protein