PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000535.1_g100.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 171aa    MW: 20124.7 Da    PI: 7.0193
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000535.1_g100.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR160.17.1e-1984171187
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkle 82 
                                +fY +YA  +GF++r+s  ++s + g ++ r++vCskeg+r+++ ++ ++  r +r+etr +C+a+++vk    ++ + v+k++
  Pav_sc0000535.1_g100.1.br  84 RFYWNYALAIGFNIRRSCLRHS-EGGVVMGRQWVCSKEGSRSKKWTNrEDMVRIPRKETREHCQATFVVKYCPkRDAYIVNKFV 166
                                59****************9999.8999****************99883455667******************999********* PP

                       FAR1  83 leHnH 87 
                                +eH+H
  Pav_sc0000535.1_g100.1.br 167 KEHSH 171
                                ****9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    
MDVEARKKNE IQGRNSVPNS ECYFAEVESL EETENVPSLQ FLDGRIEEIT EISGHFEYDG  60
LNFQNMSIVD LEGREFAKFE EAKRFYWNYA LAIGFNIRRS CLRHSEGGVV MGRQWVCSKE  120
GSRSKKWTNR EDMVRIPRKE TREHCQATFV VKYCPKRDAY IVNKFVKEHS H
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.14e-14FAR1 family protein