PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000549.1_g1050.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 281aa    MW: 30090.9 Da    PI: 9.1183
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000549.1_g1050.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19148198255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f tae+Aa a+++a+ +++g
  Pav_sc0000549.1_g1050.1.mk 148 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDRAAYRMRG 198
                                 8********.***********9987..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    
MYGQSGTDAD ITLLDSIRRH LLGETDLRIG NSMANSVSGP IFSRSSSFSS LYPCLTENWG  60
DLPLKEDDSE DMVLYGVLRD AVNVGWVPSL GSGSADTCSL NFSVKSEPEV LTPVSTVPEK  120
KPAPVQPVRP VQQPSQAGPA VVPAKGKHYR GVRQRPWGKF AAEIRDPAKN GARVWLGTFE  180
TAEDAALAYD RAAYRMRGSR ALLNFPLRVN SGEPDPVRVT SKRSSPEPSS SSESGSPKRR  240
KKVAVLNPAQ AGLEMGAGIG QQQVGGQVVV SCTRGEQLLV S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237243PKRRKKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.15e-68ERF family protein