PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000549.1_g200.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 346aa MW: 38910.2 Da PI: 10.1167

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000549.1_g200.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	60.2	5.2e-19	16	104	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 +Wt++e +aLi ++++++++l+r++l++ +We v++++ ++++qC++k+e+l+kry+++k++ + + + st+ Pav_sc0000549.1_g200.1.mk 16 CWTNDEAQALISIYKDTWSALGRSNLRASDWETVAAALasrcPLVSPPKTAIQCRHKMEKLRKRYRNEKQRGSTHPGRFLSTWD 99 8**********************************95332233448899********************99999 PP trihelix 81 yfdql 85 +f+++ Pav_sc0000549.1_g200.1.mk 100 LFRHM 104 999 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MAALPQPKPR KFPPPCWTND EAQALISIYK DTWSALGRSN LRASDWETVA AALASRCPLV 60 SPPKTAIQCR HKMEKLRKRY RNEKQRGSTH PGRFLSTWDL FRHMFDLECE APALFGSDPD 120 RETRVGVQFG RGFRVRKDEN DRYLAESDQN LSDPDEETRK GAGFGGGFRV NVGVRGRGGE 180 NSSFSAGFDR YMSGRNDGAR GFPVKSSGDR NLGPSEFRSK SYGKTCNEKF SPKLNLKRDC 240 SYGAGTRSGF YKKFRGGLDS DGVGKEVEDP IGQMASSVEF MGEVFLKMEK KKMETARDIV 300 KMRMEMEMRQ NELIMESQKQ VLAACVDALL ESKKKKKKMK VVSSDS

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MAALPQPKPR KFPPPCWTND EAQALISIYK DTWSALGRSN LRASDWETVA AALASRCPLV  60
SPPKTAIQCR HKMEKLRKRY RNEKQRGSTH PGRFLSTWDL FRHMFDLECE APALFGSDPD  120
RETRVGVQFG RGFRVRKDEN DRYLAESDQN LSDPDEETRK GAGFGGGFRV NVGVRGRGGE  180
NSSFSAGFDR YMSGRNDGAR GFPVKSSGDR NLGPSEFRSK SYGKTCNEKF SPKLNLKRDC  240
SYGAGTRSGF YKKFRGGLDS DGVGKEVEDP IGQMASSVEF MGEVFLKMEK KKMETARDIV  300
KMRMEMEMRQ NELIMESQKQ VLAACVDALL ESKKKKKKMK VVSSDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	4e-28	Trihelix family protein