PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000551.1_g070.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 83aa    MW: 9350.43 Da    PI: 10.481
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000551.1_g070.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.32.5e-13427226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                               k+e+C++f+r G C++GdrCkF H+
  Pav_sc0000551.1_g070.1.mk  4 KREPCKYFQR-GSCQFGDRCKFLHV 27
                               89********.*************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    
MPVKREPCKY FQRGSCQFGD RCKFLHVIQQ QQKSNIFGFG SQSGSDQQRK SNPYGFGVQN  60
NSQSKGPADF GSKQSQFKVS SHL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.11e-12C3H family protein