PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000554.1_g1550.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 197aa    MW: 21722.5 Da    PI: 9.9842
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000554.1_g1550.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.00174769123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                ++C+ C++ F++   L  H  +H
  Pav_sc0000554.1_g1550.1.mk 47 FECKTCNRQFPSFQALGGHRASH 69
                                89**********99999998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MTMKRSITEM RELDRSLTMA NCLMLLSRGS HDHHHYDNFS VSPTRVFECK TCNRQFPSFQ  60
ALGGHRASHK KPRLMGPGDG NSSNGSDQSQ SQGSPPKPKT HECNICGLEF AIGQALGGHM  120
RRHRSALSNN NNNNNSQYSD SNSNSLSLSP QPAPMFQVLK KTNSGRRVMC LDLNLTPLEN  180
DLKILQIGKA APLVGFS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.15e-37C2H2 family protein