PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000557.1_g1160.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 459aa MW: 48163.1 Da PI: 6.8881

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000557.1_g1160.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.4e-12	250	295	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Pav_sc0000557.1_g1160.1.mk 250 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 295 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
MQPCSKEMQD MNSLLNSSPS SQLSLQDHHH HHLQLQPQPP QQQSHSHSHS HSHSRPHLHN 60 SHSQMHPQIP SPSPAHFDSA SHDDFLEQML SNLGPSSCSW ADDTPPSNSD NVVFTYDDSA 120 NLATKFRSQQ ISAGAGASKS ASASAAAAAA MMLQHQLMMS RSTSADSSFV PMALSLGNGD 180 FDRSNNDVVE GSSSFKSPNP MGGSLQAQNY GGPGAAMNQG PASGSGGGGG APAQPRPRVR 240 ARRGQATDPH SIAERLRRER IAERMKALQE LVPNANKTDK ASMLDEIIDY VKFLQLQVKV 300 LSMSRLGGAA AVAPLVADVS SEGGGDCIQA SANGGTRGRS SNGNQTASSS NDNSMTVTEH 360 QVAKLMEEDM GSAMQYLQGK GLCLMPISLA TAISTATCHT RNPLIHNNNN NNNNNAVMAS 420 NGGEVPSSPS MSVLTVQSAT MGNGGVDGSV KDATSVSKP

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

MQPCSKEMQD MNSLLNSSPS SQLSLQDHHH HHLQLQPQPP QQQSHSHSHS HSHSRPHLHN  60
SHSQMHPQIP SPSPAHFDSA SHDDFLEQML SNLGPSSCSW ADDTPPSNSD NVVFTYDDSA  120
NLATKFRSQQ ISAGAGASKS ASASAAAAAA MMLQHQLMMS RSTSADSSFV PMALSLGNGD  180
FDRSNNDVVE GSSSFKSPNP MGGSLQAQNY GGPGAAMNQG PASGSGGGGG APAQPRPRVR  240
ARRGQATDPH SIAERLRRER IAERMKALQE LVPNANKTDK ASMLDEIIDY VKFLQLQVKV  300
LSMSRLGGAA AVAPLVADVS SEGGGDCIQA SANGGTRGRS SNGNQTASSS NDNSMTVTEH  360
QVAKLMEEDM GSAMQYLQGK GLCLMPISLA TAISTATCHT RNPLIHNNNN NNNNNAVMAS  420
NGGEVPSSPS MSVLTVQSAT MGNGGVDGSV KDATSVSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	255	260	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	5e-62	bHLH family protein