PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000567.1_g760.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 298aa MW: 33353.9 Da PI: 6.8876

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000567.1_g760.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.5	5.4e-06	137	156	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F+r n++ H+ Pav_sc0000567.1_g760.1.mk 137 FSCPVCSKTFNRYNNMQMHM 156 89*****************9 PP
2	zf-C2H2	13.9	0.00016	222	244	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F + + ++H +++ Pav_sc0000567.1_g760.1.mk 222 FGCRKCGKPFAVRGDWRTHEKNC 244 56*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence
MQTPSTTTTT TDLGNSATSF LEADEDQDEE SIFLSLGPPG QGIPKQYHLI YHQSSSSTQP 60 PPPHHHHHHH HHQDQNPNTD HLEDGAVTVA LHIGPPSSGS TISSSIGNPN HNHIGAPMEG 120 QYWIPSPAQI LVGPTQFSCP VCSKTFNRYN NMQMHMWGHG SQYRKGPESL RGTKPASSVL 180 RLPCYCCAEG CKNNIEHPRS RPLKDFRTLQ THYKRKHGSK PFGCRKCGKP FAVRGDWRTH 240 EKNCGKLWFC ICGSDFKHKR SLKDHVRAFG DGHAPYGVEL CTEPEEEDHL DDEDDDDD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13290.1	1e-108	C2H2 family protein