PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000568.1_g140.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

M-type_MADS

Protein Properties

Length: 656aa MW: 71478.2 Da PI: 5.4178

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000568.1_g140.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	66.4	3e-21	16	62	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 en+s qvtfskRr g++KKA+EL++LC+ae+a+i+fs+ k++ + Pav_sc0000568.1_g140.1.mk 16 MENESHLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFCF 62 699*************************************9998766 PP
2	SRF-TF	63.2	2.9e-20	288	330	3	45
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 en++n qvtfskRr+g++KKA+ELS+LC++e +i+fs+ k Pav_sc0000568.1_g140.1.mk 288 MENETNLQVTFSKRRAGLFKKASELSTLCGTELGLIVFSPGKK 330 69*************************************9765 PP

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence
MVKKTRGRQK VEMVKMENES HLQVTFSKRR SGLFKKASEL CTLCGAEIAI IVFSPGKKVF 60 CFGHPSIETL LDRFEGTVPR QILNSETQKI IDGYRNAGLC EITDELTRVL EVLEDERKWG 120 DALTQSMKAN QEGKWWQGPV EEMELDQLET LKASLLELKS KVADEAKLRL SAAQSTNLAH 180 NPNFFVGSSS SSAAAQNANP AHNNFFVGSS SRAAAGPSGL QGLVNPDINN VGFNFNGNDH 240 VMQVPHQPNN VGFNGNPNAM PLNGWNPNLG LAMPRICRGR QKLQMVKMEN ETNLQVTFSK 300 RRAGLFKKAS ELSTLCGTEL GLIVFSPGKK AFCFGHPSIE EVLDKYEGRP SRQPLNHDMQ 360 QIIEACSHAT LNELNAELTQ VMERIERERK RGEELTQLLK ASQAECGLEG PVEELDLDKM 420 EILRASLIEL RSKVADQAKQ KLAAAKTANP PHNPNFYVGT SSSSAAAQSA NPAHNNFFVG 480 SSSSSAAAGP SGLQGLANPE INNVGFNFNG NDFVMQAPDQ PNNFGFNFNG AEPVLQAPDQ 540 PNNLGFNFNG AEPVMQAPPD QPNNLGFNFN GNNLGFNFNG AEPVLQAPDQ PKNLGFNFNC 600 AEPVLQAPDQ PNNLGFNFNG AEPVMQAPPD QPNNVGFNGD PMFLSDWNPN LGGGFL

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence

MVKKTRGRQK VEMVKMENES HLQVTFSKRR SGLFKKASEL CTLCGAEIAI IVFSPGKKVF  60
CFGHPSIETL LDRFEGTVPR QILNSETQKI IDGYRNAGLC EITDELTRVL EVLEDERKWG  120
DALTQSMKAN QEGKWWQGPV EEMELDQLET LKASLLELKS KVADEAKLRL SAAQSTNLAH  180
NPNFFVGSSS SSAAAQNANP AHNNFFVGSS SRAAAGPSGL QGLVNPDINN VGFNFNGNDH  240
VMQVPHQPNN VGFNGNPNAM PLNGWNPNLG LAMPRICRGR QKLQMVKMEN ETNLQVTFSK  300
RRAGLFKKAS ELSTLCGTEL GLIVFSPGKK AFCFGHPSIE EVLDKYEGRP SRQPLNHDMQ  360
QIIEACSHAT LNELNAELTQ VMERIERERK RGEELTQLLK ASQAECGLEG PVEELDLDKM  420
EILRASLIEL RSKVADQAKQ KLAAAKTANP PHNPNFYVGT SSSSAAAQSA NPAHNNFFVG  480
SSSSSAAAGP SGLQGLANPE INNVGFNFNG NDFVMQAPDQ PNNFGFNFNG AEPVLQAPDQ  540
PNNLGFNFNG AEPVMQAPPD QPNNLGFNFN GNNLGFNFNG AEPVLQAPDQ PKNLGFNFNC  600
AEPVLQAPDQ PNNLGFNFNG AEPVMQAPPD QPNNVGFNGD PMFLSDWNPN LGGGFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-53	M-type_MADS family protein