PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000582.1_g340.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 368aa    MW: 42548.1 Da    PI: 7.6662
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000582.1_g340.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF602.9e-191151343
                               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                               i n++ r++tf kR +g++KKA+E S+LC+++v++ii++++
  Pav_sc0000582.1_g340.1.mk 11 IANERSRKTTFQKRSKGMMKKAYEFSTLCEVDVCIIIYGPK 51
                               89*************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    
MGRGRLKMEL IANERSRKTT FQKRSKGMMK KAYEFSTLCE VDVCIIIYGP KLTDRPPELQ  60
TWPQNSEQVD RIINKYKAST MSKPAKKTFD LSDLLMDRKN KVYADIYRAR KEMYETKYPT  120
WDERIESFSE NQLEALLDKL DAKLETGKRT LLNKRNGAAH RVPVTKKVRM GGNPNMGESS  180
SQKEPCNSYM QEHYHEEDQN PTSSLNNNTV DMLQPFAVSS FDHHQPSDQT LPFDNSDQYL  240
NNLMAPNPSS MAMWMLMEGN YNYSTLQYRA GDSSSAHYSQ SPLEGYHCNY SDQMNMNMMM  300
TNNNIGPLSS SSMSHYYARL MQPAVPYMHQ MMPPSLSSHQ LLQVHTSQVK EDQYEDINQY  360
LVMNNKMG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-24M-type_MADS family protein