PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000586.1_g190.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 572aa MW: 63017.7 Da PI: 6.8926

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000586.1_g190.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.6	4.6e-13	400	446	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI++Lq Pav_sc0000586.1_g190.1.mk 400 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 446 799*********************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 572 aa Download sequence
MGIGTDENLH NKLSDLVEPP HASNFSWNYA IFWQISRSKS GDWALCWGDG SCREPKEGEE 60 SEATRNLNLR LEDETQQTMR KIVLQKLHTL FGSSDEYNGA LGLDRVTDTE MFLLASMYFS 120 FPRGEGGPGK CFASGKHVWL SDLLKSGSDY CVRSFLAKSA GVQTIVLVPT DVGVVELGSV 180 RCVGESLELL QSIRSLFSTQ SSLMRSKPLT GFPVMGKRRD ENAQLTNLSP VERGEGVPKI 240 FGQDLNSGNS GRPRYREKLA VRKVEERPWD VYSNGNRIAF SSPRNGIQGS SWPHIHDAKQ 300 GSPTEIYASQ SPVNNIQELV NGVRDDFRLN HYQPQKQVTM QIDFSGATSR PSVVARPVGA 360 DSENSDAEAP CKEERPGTAD ERRPRKRGRK PANGREEPLN HVEAERQRRE KLNQRFYALR 420 AVVPNISKMD KASLLGDAIA YINELQVKLK VMEADRENLG GTSRDASALG ANPGISTENQ 480 SQAPDVDIQA VHDEVVVRVS CPLDSHPASR VIQAFKEAQI TVLESKLCCA ANDTVCHTFV 540 IKSQGSEPLT KEKLIAAFSG ESNSLQSLSS VG

Sequence ? help Back to Top

Protein Sequence Length: 572 aa Download sequence

MGIGTDENLH NKLSDLVEPP HASNFSWNYA IFWQISRSKS GDWALCWGDG SCREPKEGEE  60
SEATRNLNLR LEDETQQTMR KIVLQKLHTL FGSSDEYNGA LGLDRVTDTE MFLLASMYFS  120
FPRGEGGPGK CFASGKHVWL SDLLKSGSDY CVRSFLAKSA GVQTIVLVPT DVGVVELGSV  180
RCVGESLELL QSIRSLFSTQ SSLMRSKPLT GFPVMGKRRD ENAQLTNLSP VERGEGVPKI  240
FGQDLNSGNS GRPRYREKLA VRKVEERPWD VYSNGNRIAF SSPRNGIQGS SWPHIHDAKQ  300
GSPTEIYASQ SPVNNIQELV NGVRDDFRLN HYQPQKQVTM QIDFSGATSR PSVVARPVGA  360
DSENSDAEAP CKEERPGTAD ERRPRKRGRK PANGREEPLN HVEAERQRRE KLNQRFYALR  420
AVVPNISKMD KASLLGDAIA YINELQVKLK VMEADRENLG GTSRDASALG ANPGISTENQ  480
SQAPDVDIQA VHDEVVVRVS CPLDSHPASR VIQAFKEAQI TVLESKLCCA ANDTVCHTFV  540
IKSQGSEPLT KEKLIAAFSG ESNSLQSLSS VG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	382	390	RRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	0.0	bHLH family protein