PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000586.1_g310.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 154aa    MW: 17720.5 Da    PI: 6.9331
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000586.1_g310.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.75.2e-40151141100
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                                +CaaC++lrr+C ++C lapyfp e+ +kfa vhk+FGasnv+k+++ ++e++reda+++lvyeA+ar+rdPvyG++g i++lq
  Pav_sc0000586.1_g310.1.mk  15 PCAACRMLRRRCDRNCSLAPYFPGEEIEKFAGVHKVFGASNVIKMIQMVEETRREDAVKALVYEARARLRDPVYGCTGAIFHLQ 98 
                                7*********************************************************************************** PP

                     DUF260  85 qqleqlkaelallkee 100
                                + +e+l+++l++++++
  Pav_sc0000586.1_g310.1.mk  99 KMIEELRSQLESIRSQ 114
                                **********999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    
MDTQVVPMHS RVHQPCAACR MLRRRCDRNC SLAPYFPGEE IEKFAGVHKV FGASNVIKMI  60
QMVEETRRED AVKALVYEAR ARLRDPVYGC TGAIFHLQKM IEELRSQLES IRSQVLELQQ  120
HRDQLLGILM NNVHCLEDDL FSTVHHDPMF GGDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-45LBD family protein