PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000586.1_g780.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 242aa    MW: 27884.9 Da    PI: 4.695
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000586.1_g780.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.4e-203892256
                               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                               +++ +f++eq++ Le+lFe+++ +  +++ +LAk+lgL+ rqV +WFqN+Ra++k
  Pav_sc0000586.1_g780.1.mk 38 KNKKRFSDEQIRSLESLFESESRLEPRKKMQLAKELGLQPRQVAIWFQNKRARWK 92
                               67789*************************************************9 PP
2HD-ZIP_I/II121.54.4e-3939130293
                HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                                +k+r+s+eq+++LE+ Fe+e++Lep++K++la+eLglqprqva+WFqn+RAR+k+kqlE+dy+ L+++y++l+++ e+L+ke++
  Pav_sc0000586.1_g780.1.mk  39 NKKRFSDEQIRSLESLFESESRLEPRKKMQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYSILRANYNNLASKFEALKKEKQ 122
                                79********************************************************************************** PP

                HD-ZIP_I/II  86 eLreelke 93 
                                +L  +l++
  Pav_sc0000586.1_g780.1.mk 123 ALVIQLQK 130
                                **999986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MMLDQIEYSS PTAEDDHEGF SCMSSLEAAG SVKRKSSKNK KRFSDEQIRS LESLFESESR  60
LEPRKKMQLA KELGLQPRQV AIWFQNKRAR WKSKQLERDY SILRANYNNL ASKFEALKKE  120
KQALVIQLQK LNDLMRERPE EERQSCGESD NGDAARSESD QVKINHLSVE KSQQGGLGVL  180
SDDDSSIKAE YFGLEDEPNL VMSLVESADG SLTSTEDWGR LNSERFFDES ISSDYQWWDF  240
WS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.15e-55HD-ZIP family protein