PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000586.1_g860.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 300aa    MW: 33859.9 Da    PI: 5.3823
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000586.1_g860.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.4e-11129170854
                                HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                +Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  Pav_sc0000586.1_g860.1.mk 129 AERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 170
                                7*********************6.....4***************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MEELIISPSS SSSLVSLPQE TSPSLQQRLQ FIVQSQPDWW SYAIFWQTST DHQDNGRLLL  60
TWGDGHFQGS KDPSAKHHNN PYGILSERRK ILKGIQSLIN DNNPDHHQDS IMDHMGLDAD  120
VSDGEWFYAE RQRREKLNHR FYALRAVVPN VSRMDKASLL SDAVSYINEL KTKVDELESQ  180
VQRESKKVKV ETGDNLDIQS TTTSVEQIAK PPSSSANGSG LEVEVKIVGT DAMIRVQSEN  240
VNYPSARLMA ALRDLELQIH HASLSCINEL MLQDIVVKVP ENMRSEDSLK SALLRILDQN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.14e-52bHLH family protein