PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000588.1_g200.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 560aa MW: 60052.7 Da PI: 5.1605

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000588.1_g200.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	7e-09	374	424	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + ++ Ka +L + ++Y++sLq Pav_sc0000588.1_g200.1.mk 374 NSHSLAERVRREKISERMKFLQDLVPGC---SKVIvTGKAVMLDEIINYVQSLQ 424 58***********************9...8999899*************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence
MDMGDQDKFE LENRNEDPMN YSPGMAPDWR FGGSNLTNTS VGLVSTGNSM AVSKGDLVGS 60 SSRPSASMVD SFNPTLWDHP TNSQDLGGFC DINGQTSAST SDTIGIRKGI PVSLRSGIDR 120 PLEMCWNPPN SMLKGGIFLP NGPGMLPQSL SEFPADSAFI ERAARFSCFN GGSFSDMLNP 180 FGVPESMSPY SRVGGMMHWT QEVVAGNGSK AVSCAQSQRN ELNGGDASRD VSLPIEHGTT 240 EGSPLKNEKK SESLVKSHDE VKHTVGGSGN ESDEADFSGG AGQEEPSGTG VEPSSKGSKK 300 RKRSGQANEL DQAYAQQPGE SAQDASEIQQ KGEQHPVSTT NKTTGKQSKQ GSQASDPPKE 360 EYIHVRARRG QATNSHSLAE RVRREKISER MKFLQDLVPG CSKVIVTGKA VMLDEIINYV 420 QSLQRQVEFL SMKLATVNPR LDFNIEGLLT KDILQSRVGP SSTLGFSPDM PIAYPQLHPS 480 QSGLIQAGLS GMGNPSDILR RAMSSQMTPM TGGFKEPSQL PNVWEDELHN VVQMSYGAGT 540 PPSSQDVDGS GTPGQMKVEL

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence

MDMGDQDKFE LENRNEDPMN YSPGMAPDWR FGGSNLTNTS VGLVSTGNSM AVSKGDLVGS  60
SSRPSASMVD SFNPTLWDHP TNSQDLGGFC DINGQTSAST SDTIGIRKGI PVSLRSGIDR  120
PLEMCWNPPN SMLKGGIFLP NGPGMLPQSL SEFPADSAFI ERAARFSCFN GGSFSDMLNP  180
FGVPESMSPY SRVGGMMHWT QEVVAGNGSK AVSCAQSQRN ELNGGDASRD VSLPIEHGTT  240
EGSPLKNEKK SESLVKSHDE VKHTVGGSGN ESDEADFSGG AGQEEPSGTG VEPSSKGSKK  300
RKRSGQANEL DQAYAQQPGE SAQDASEIQQ KGEQHPVSTT NKTTGKQSKQ GSQASDPPKE  360
EYIHVRARRG QATNSHSLAE RVRREKISER MKFLQDLVPG CSKVIVTGKA VMLDEIINYV  420
QSLQRQVEFL SMKLATVNPR LDFNIEGLLT KDILQSRVGP SSTLGFSPDM PIAYPQLHPS  480
QSGLIQAGLS GMGNPSDILR RAMSSQMTPM TGGFKEPSQL PNVWEDELHN VVQMSYGAGT  540
PPSSQDVDGS GTPGQMKVEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	299	304	KKRKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.1	1e-131	bHLH family protein