PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000590.1_g090.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 364aa    MW: 39677 Da    PI: 5.021
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000590.1_g090.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.68.3e-071061381955
                                HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH  19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +f+ Lr+l+P++    ++K + a+ L +++eY+++Lq
  Pav_sc0000590.1_g090.1.mk 106 GFQILRDLIPHS----DQKRDTASFLLEVIEYVQYLQ 138
                                69*********9....8*******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    
MRTLAKGNQE EDDYDDEEFV SRKEGPSSNS NSKDAKNNDK ASAIRSKHSV TEQRRRSKIN  60
ERGNCFETER AGPAGEFVHL LWSVDVPLGG YIMDVEVLML RIGSAGFQIL RDLIPHSDQK  120
RDTASFLLEV IEYVQYLQGK VQKYEGSYQG WSPEPTKLMP WAGKNDTGAV SPFPGKFDEN  180
SISITPNMLA NSTQNPVESD PVRDVASKIM DRQPEIVNKA IPLPMPLPVN MTAPVRSDGI  240
LAHPLQGPVS DAQSTQCPTT SASDTLNQQE ELTIEGGTIS ISSVYSQGLL NSLNQALQSA  300
GVDLSQASVS VQIDLGNRAN RGLSSGTPAS KDHEIPHSSN QTVAHFRDAG SGEDSDQAHK  360
RMKT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-87bHLH family protein