PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000591.1_g170.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 173aa MW: 19280 Da PI: 6.3754

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000591.1_g170.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	110.7	1.1e-34	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C aCk+lrrkC+ +C++ pyf e+ + +f ++hk+FGasnv++ll++lp ++r +a++++ eA ar++dP+yG+v++i +l Pav_sc0000591.1_g170.1.br 7 PCGACKFLRRKCVIGCIFEPYFSYEEgATHFSVIHKVFGASNVSNLLAHLPLSDRCEAATTIWHEAVARLQDPIYGCVSHIIAL 90 7********************99979**************************************************** PP DUF260 84 qqqleqlkaelallkee 100 +qq+ +l+a+la lk++ Pav_sc0000591.1_g170.1.br 91 KQQVVNLQAQLAFLKDQ 107 **********99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence
MASSRSPCGA CKFLRRKCVI GCIFEPYFSY EEGATHFSVI HKVFGASNVS NLLAHLPLSD 60 RCEAATTIWH EAVARLQDPI YGCVSHIIAL KQQVVNLQAQ LAFLKDQAYA VANPNDQSAH 120 DLQAYMEECD LINEIPKCSN YEDLVTSLTL MRANAHINEI PECSNAQSSW RKC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	4e-56	LBD family protein