PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000597.1_g010.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

M-type_MADS

Protein Properties

Length: 99aa MW: 13224.5 Da PI: 10.1288

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000597.1_g010.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	22	2.2e-07	25	42	1	18
S---SHHHHHHHHHHHHH CS SRF-TF 1 krienksnrqvtfskRrn 18 krie+++nrqvtf+kRr+ Pav_sc0000597.1_g010.1.mk 25 KRIEDTTNRQVTFCKRRE 42 79**************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 99 aa Download sequence
MAYENKSMYL DSPQRKLVWG KIEVKRIEDT TNRQVTFCKR RERERERERE RERERERERE 60 RERERERERE RERERERERE RERERERERE RERERERES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	41	51	RERERERERER
2	43	53	RERERERERER
3	45	55	RERERERERER
4	47	57	RERERERERER
5	49	59	RERERERERER
6	51	61	RERERERERER
7	53	63	RERERERERER
8	55	65	RERERERERER
9	57	67	RERERERERER
10	59	69	RERERERERER
11	61	71	RERERERERER
12	63	73	RERERERERER
13	65	75	RERERERERER
14	67	77	RERERERERER
15	69	79	RERERERERER
16	71	81	RERERERERER
17	73	83	RERERERERER
18	75	85	RERERERERER
19	77	87	RERERERERER
20	79	89	RERERERERER
21	81	91	RERERERERER
22	83	93	RERERERERER
23	85	95	RERERERERER
24	87	97	RERERERERER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	1e-09	MIKC_MADS family protein