PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000600.1_g500.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

SBP

Protein Properties

Length: 1069aa MW: 118374 Da PI: 8.084

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000600.1_g500.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.8	9.8e-41	145	222	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe+hska+++ v++++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ Pav_sc0000600.1_g500.1.mk 145 MCQVDNCKEDLSNAKDYHRRHKVCEIHSKATKAPVAKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 222 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1069 aa Download sequence
MEDVGGQVAA PIFIHQTLSG RFCDVPAMAR KRDLPYQGSN YQHPHSQQPR FTTAGNNWNP 60 NVWDWDNVRF VAKPLDTEML HLGSSRTEQG KKEEASGAVK NTAEDEDDES LQLNLAGGLT 120 SVEEPMPRPN KRVRSGSPGN GSYPMCQVDN CKEDLSNAKD YHRRHKVCEI HSKATKAPVA 180 KQMQRFCQQC SRFHPLSEFD EGKRSCRRRL AGHNRRRRKT QPEDVTSRLT LPGDRDNKSI 240 GNLDIVNLLA AIARPQGKND VRNINCSSVL DREQLQILSK INSLPLPADL AAKLPNLGSL 300 NRKAVELLAL DLQNKLNGRT SASTVDLLTV LSATLAASSP EALAMLSQKS SQSSDSEKTK 360 LTCSDQAAGP NLHKIPTQEF NSAGGERSST SYQSPMEDSD CQVQETRVNL PLQLFSSSPE 420 NDSPPKLASS RKYFSSDSSN PTEDRSPSSS PPVVQTLFPM KSMAETVKSE KLSISKEINA 480 NPDSGRTRGC NMPFDLFRGS NRGADASSIQ SFPHQAGYTS SGSDHSPSSL NSDPQDRTGR 540 ILFKLFDKDP SHLPGSLRTQ IYNWLSNSPS EMESYIRPGC VVLSVYVSMS SAAWEQFEGN 600 LVQRVSSLVQ SSDSDFWRSG RFLVHTGRQL ASHKDGKIRI CKAWRSCSSP ELISVSPLAV 660 VGGQETSLVL RGRNLTNLGT RIHCTYLGGY TSKEATRSTY HGTMYDEINL GSFQVHDASP 720 GVLGRCFIEV ENGFKGNGFP VIIADATICR ELRLLESVFD AEAKACDVIS EDENHDYGRP 780 TSREEVLHFL NELGWLFQRK RICSMLQEPR YSLGRFKFLL TFTVEKDCCV LVKTLLDILF 840 ERNLDGEGLS GESLGMLLDI QLLNRAVKRR CRKMVDLLVN YSVISSDKRY IFPPNLAGPG 900 GMTPLHLAAC MSNTDDMIDA LTNDPQEIGL NCWNSLLDAN GQSPYAYSLM RNNYSYNKLV 960 ARKLADRRNS QVTVTIGNEI EQPQMTMELE HRTSTRFRQG SGSCAKCAMA ASKYSRRVPG 1020 AQGLLQRPFI HSMLAIAAVC VCVCLFLRGS PDIGLVAPFK WENLDFGTI

Sequence ? help Back to Top

Protein Sequence Length: 1069 aa Download sequence

MEDVGGQVAA PIFIHQTLSG RFCDVPAMAR KRDLPYQGSN YQHPHSQQPR FTTAGNNWNP  60
NVWDWDNVRF VAKPLDTEML HLGSSRTEQG KKEEASGAVK NTAEDEDDES LQLNLAGGLT  120
SVEEPMPRPN KRVRSGSPGN GSYPMCQVDN CKEDLSNAKD YHRRHKVCEI HSKATKAPVA  180
KQMQRFCQQC SRFHPLSEFD EGKRSCRRRL AGHNRRRRKT QPEDVTSRLT LPGDRDNKSI  240
GNLDIVNLLA AIARPQGKND VRNINCSSVL DREQLQILSK INSLPLPADL AAKLPNLGSL  300
NRKAVELLAL DLQNKLNGRT SASTVDLLTV LSATLAASSP EALAMLSQKS SQSSDSEKTK  360
LTCSDQAAGP NLHKIPTQEF NSAGGERSST SYQSPMEDSD CQVQETRVNL PLQLFSSSPE  420
NDSPPKLASS RKYFSSDSSN PTEDRSPSSS PPVVQTLFPM KSMAETVKSE KLSISKEINA  480
NPDSGRTRGC NMPFDLFRGS NRGADASSIQ SFPHQAGYTS SGSDHSPSSL NSDPQDRTGR  540
ILFKLFDKDP SHLPGSLRTQ IYNWLSNSPS EMESYIRPGC VVLSVYVSMS SAAWEQFEGN  600
LVQRVSSLVQ SSDSDFWRSG RFLVHTGRQL ASHKDGKIRI CKAWRSCSSP ELISVSPLAV  660
VGGQETSLVL RGRNLTNLGT RIHCTYLGGY TSKEATRSTY HGTMYDEINL GSFQVHDASP  720
GVLGRCFIEV ENGFKGNGFP VIIADATICR ELRLLESVFD AEAKACDVIS EDENHDYGRP  780
TSREEVLHFL NELGWLFQRK RICSMLQEPR YSLGRFKFLL TFTVEKDCCV LVKTLLDILF  840
ERNLDGEGLS GESLGMLLDI QLLNRAVKRR CRKMVDLLVN YSVISSDKRY IFPPNLAGPG  900
GMTPLHLAAC MSNTDDMIDA LTNDPQEIGL NCWNSLLDAN GQSPYAYSLM RNNYSYNKLV  960
ARKLADRRNS QVTVTIGNEI EQPQMTMELE HRTSTRFRQG SGSCAKCAMA ASKYSRRVPG  1020
AQGLLQRPFI HSMLAIAAVC VCVCLFLRGS PDIGLVAPFK WENLDFGTI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	865	870	RAVKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein