PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000600.1_g540.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 145aa    MW: 16422 Da    PI: 4.3739
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000600.1_g540.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26061.22.8e-1926735100
                     DUF260  35 klFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                                ++FGasnv++ll++lp ++r +a+++l  eAear++dP+yG+v++i++lqqq+  l+a+la lk++
  Pav_sc0000600.1_g540.1.mk   2 RIFGASNVSRLLATLPLSDRCEAATTLWHEAEARLQDPIYGCVSHIFALQQQVVDLQAQLAFLKDQ 67 
                                89***********************************************************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    
MRIFGASNVS RLLATLPLSD RCEAATTLWH EAEARLQDPI YGCVSHIFAL QQQVVDLQAQ  60
LAFLKDQAAQ SFVNGSAVAN PNQAAQSWFH ELENSSNYMP QFNSTHINNP GTTSYYENEI  120
RQWDEYNKQW GFQDADELQS VVSSY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.11e-23LBD family protein