PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000618.1_g390.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 179aa    MW: 21174.6 Da    PI: 9.9844
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000618.1_g390.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.12.3e-3051150195
                                EEEE-..-HHHHTT-EE--HHH.HTT.....---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                f+kv tpsdv++++r+v+pk++ae+h     +  +e  +++ l +ed +g++W+++++y+ +s++yvlt+GW +Fvk+++Lk+g
  Pav_sc0000618.1_g390.1.mk  51 FEKVATPSDVGRLNRMVIPKQHAEKHfplhlS--EElcKGVLLNFEDGEGKVWRFRYCYWSSSQSYVLTRGWTHFVKEKKLKAG 132
                                99***************************652..44448899****************************************** PP

                                -EEEEEE-SSSEE..EEE CS
                         B3  78 DfvvFkldgrsefelvvk 95 
                                D+v F+++  +e+++++ 
  Pav_sc0000618.1_g390.1.mk 133 DVVRFERSIGEEKKMFID 150
                                ******874466666665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    
MLRKHSYTNE LEMYKLKLFN AGAGDGDAAR KRIKCHVNLM DGYDHQREWL FEKVATPSDV  60
GRLNRMVIPK QHAEKHFPLH LSEELCKGVL LNFEDGEGKV WRFRYCYWSS SQSYVLTRGW  120
THFVKEKKLK AGDVVRFERS IGEEKKMFID CRLRNVEVGG SERWLVGLKL KRGFKMMEW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-55RAV family protein