PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000624.1_g1350.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 239aa    MW: 27028.7 Da    PI: 5.8623
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000624.1_g1350.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-135496754
                                HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                         HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                                  Er+RR+++N++++ Lr ++Pk +      K++Ka+i + A++YI++L
  Pav_sc0000624.1_g1350.1.mk 54 VSERNRRKKLNERLFALRAVVPKiS------KMDKASIIKDAIDYIQEL 96
                                57*********************66......****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MDNIGDEYKH YWETNMFLQS AELDSWGLDE AFSGYYDSSS PDGGASSMAS KNIVSERNRR  60
KKLNERLFAL RAVVPKISKM DKASIIKDAI DYIQELHEQE RRIQTEIGEL ESGRSKKNLG  120
SEFDQELPVL LRSKKKKIDQ LYDSGGSRTS TIELRVTYMG EKTVVASLTC SKRTDTMVKL  180
CEVFESLKLK IITANITAFS GRVLKTVFIE ADEEEKDHLK IKIETAIAAL NDPQSPMSV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.15e-84bHLH family protein