PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000625.1_g100.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 299aa    MW: 32701.3 Da    PI: 6.6788
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000625.1_g100.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.58.7e-202267147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                               +g+W+++Ede+l ++v+ +G ++W++I++ ++ gR++k+c++rw + 
  Pav_sc0000625.1_g100.1.mk 22 KGPWSPDEDEKLRQLVQHHGARNWSLISKSVP-GRSGKSCRLRWCNQ 67
                               79******************************.***********985 PP
2Myb_DNA-binding56.37.2e-1876118347
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                ++T+eEde+++ a++++G++ W+tIar ++ gRt++ +k++w++ 
  Pav_sc0000625.1_g100.1.mk  76 AFTPEEDEIIAGAHAKYGNK-WATIARLLN-GRTDNAIKNHWNST 118
                                79******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MDQRESAMDS SAQAQRELDR VKGPWSPDED EKLRQLVQHH GARNWSLISK SVPGRSGKSC  60
RLRWCNQLSP EVEHRAFTPE EDEIIAGAHA KYGNKWATIA RLLNGRTDNA IKNHWNSTLK  120
RKFSAISGND DGATIDDNHV RPEKKTATAA VSFSGLCYSP GSPSGSDVSD SGAPAISSSH  180
LFRPVARTGG VLTRESPPSQ NDSKNEAHEP STLLTLSLPG IDDTASHELP ILESAARRVD  240
GTASLQPETG NTMSFEPEFL SVMQEMIRNE VRSYMEGMCL HSEGVRNAGV KRIAISKLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-78MYB family protein