PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000631.1_g160.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family YABBY
Protein Properties Length: 233aa    MW: 26037.5 Da    PI: 8.1703
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000631.1_g160.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY244.71.8e-75231962170
                      YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee....lleelkveeen 81 
                                ++ s s+q+Cyv+CnfC+t+lavsvP +slfk+vtvrCGhC++llsvn++      + ++hl + + ++    l+e+++++ ++
  Pav_sc0000631.1_g160.1.mk  23 HLLSPSDQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCSNLLSVNMRALLLPPPNNQHLPHPFFNTphnlLQEDMRNAPSS 106
                                56789**********************************************999999*****9998877556556666666555 PP

                      YABBY  82 lksnvekeesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfP 164
                                 + ++++ + +++s+ + +    +++e+p++p  v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP
  Pav_sc0000631.1_g160.1.mk 107 NTLMNHQPNYTNESIMAIRGGGLDHQEMPKPPAaVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 190
                                555544444444444444447778999**999889************************************************* PP

                      YABBY 165 kihfgl 170
                                +ihfgl
  Pav_sc0000631.1_g160.1.mk 191 HIHFGL 196
                                ****97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MSSAAASSTA FNSPDQQQQQ QQHLLSPSDQ LCYVHCNFCD TVLAVSVPCS SLFKTVTVRC  60
GHCSNLLSVN MRALLLPPPN NQHLPHPFFN TPHNLLQEDM RNAPSSNTLM NHQPNYTNES  120
IMAIRGGGLD HQEMPKPPAA VNRPPEKRQR VPSAYNRFIK DEIQRIKAGN PDISHREAFS  180
AAAKNWAHFP HIHFGLMPDQ PVKKTNMRQQ EGEDMLMKDG FFSTPANVGV SPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-84YABBY family protein