PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000648.1_g330.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 180aa    MW: 20692.8 Da    PI: 10.7526
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000648.1_g330.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.22.3e-2218104490
                       FAR1   4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                                + +  +vGF vr+ + ++s  +g++  r++ C+k+g++ ++k k   e+++r++ r gC+a++ vk+ek+gkw+vt+++++HnH
  Pav_sc0000648.1_g330.1.mk  18 DYFLIKVGFVVRVMQRRRSGIDGRTLARRLGCNKQGFSPNQKGKFGPEKKPRPSAREGCNATILVKMEKSGKWVVTRFVQDHNH 101
                                556679**************************************9*************************************** PP

                       FAR1  88 ela 90 
                                +l+
  Pav_sc0000648.1_g330.1.mk 102 PLV 104
                                *96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    
MKARRRSSAS DISPKHFDYF LIKVGFVVRV MQRRRSGIDG RTLARRLGCN KQGFSPNQKG  60
KFGPEKKPRP SAREGCNATI LVKMEKSGKW VVTRFVQDHN HPLVVTASGF STAGDKDRKI  120
EELMMELERQ DQLCAGYREK LLSFMNNVEA ETEELSEKIQ VIVDNVRKVE SEVQKHSRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12850.13e-62FAR1 family protein