PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000661.1_g220.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 370aa MW: 40801.9 Da PI: 5.264

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000661.1_g220.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.6	3.9e-12	37	75	2	44
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiL 44 r +h+e E+rRR++iN++f+ Lr+l+Pk+ ++K +Ka+ L Pav_sc0000661.1_g220.1.mk 37 RSKHSETEQRRRSKINERFQMLRDLIPKN----DQKRDKASFL 75 899*************************9....8999999987 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MAKASKGHHD EFEDDDEESH GGNLAVKVEG QGREKNRSKH SETEQRRRSK INERFQMLRD 60 LIPKNDQKRD KASFLLEEKV NLYEGYQGWS PEPTKLMPWK NHNRPGENFV DQSQVMNNGS 120 GHDNNAVVSP AMLPNTQNSV ESDLGSGVVY KALDHIPGLA TRSVPNVQQQ NIFDPIGSVG 180 VPTQPLQESI SDAENMTSNP PYQLWQGITS TTASDDKLKK QDENSGSGSI SSAYSQGTRY 240 TEYNRTLIIY FVMERYHFAV TELAFVLSRV LNNLTQALQS SGLDLSQASI SVQINVGSRV 300 DSGLTSMASS SKVGLESSTV ALNPILNVTA ASATDAQLNQ SLNTQMTQTQ VSSCDEDFEP 360 AHKRFRTGES

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MAKASKGHHD EFEDDDEESH GGNLAVKVEG QGREKNRSKH SETEQRRRSK INERFQMLRD  60
LIPKNDQKRD KASFLLEEKV NLYEGYQGWS PEPTKLMPWK NHNRPGENFV DQSQVMNNGS  120
GHDNNAVVSP AMLPNTQNSV ESDLGSGVVY KALDHIPGLA TRSVPNVQQQ NIFDPIGSVG  180
VPTQPLQESI SDAENMTSNP PYQLWQGITS TTASDDKLKK QDENSGSGSI SSAYSQGTRY  240
TEYNRTLIIY FVMERYHFAV TELAFVLSRV LNNLTQALQS SGLDLSQASI SVQINVGSRV  300
DSGLTSMASS SKVGLESSTV ALNPILNVTA ASATDAQLNQ SLNTQMTQTQ VSSCDEDFEP  360
AHKRFRTGES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	216	221	DKLKKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	2e-40	bHLH family protein