PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000661.1_g360.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 268aa    MW: 30535.7 Da    PI: 9.0488
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000661.1_g360.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.21.2e-29959151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               krienk+ rqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eyss
  Pav_sc0000661.1_g360.1.mk  9 KRIENKISRQVTFSKRRTGLLKKAHEISVLCDADVALIVFSTKGKLFEYSS 59
                               79***********************************************96 PP
2K-box96.54.1e-32751741100
                      K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                                y++++ +  +e + + ++ e+ kL ++ie Lqr++Rh+ GedL++Lsl+eLq+Le qLe++lk+iR++Kn+l++e+i+el kk+
  Pav_sc0000661.1_g360.1.mk  75 YAEQQLTTDAEPQGSCWSLEYPKLAARIEVLQRKLRHFTGEDLDPLSLRELQNLELQLETALKRIRTRKNHLMHESISELHKKQ 158
                                566777788899999********************************************************************* PP

                      K-box  85 kelqeenkaLrkklee 100
                                k+lqe+n++L kkl+e
  Pav_sc0000661.1_g360.1.mk 159 KALQEQNNSLAKKLKE 174
                                *************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MGRGKVQLKR IENKISRQVT FSKRRTGLLK KAHEISVLCD ADVALIVFST KGKLFEYSSD  60
SSMERILERY DQYSYAEQQL TTDAEPQGSC WSLEYPKLAA RIEVLQRKLR HFTGEDLDPL  120
SLRELQNLEL QLETALKRIR TRKNHLMHES ISELHKKQKA LQEQNNSLAK KLKENENMLE  180
VEHDGPGQQV EQHQSNQAAH NSSTLLLMPP LPPQPSSTPA LLASLTIGGG IQARGGMEAG  240
DDNDRRTQTR PPTTNTLMPM WMFRHLNE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.12e-74MIKC_MADS family protein