PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000667.1_g560.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NF-YC
Protein Properties Length: 121aa    MW: 13325.4 Da    PI: 7.4434
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000667.1_g560.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC110.77.9e-35231021997
                      NF-YC  19 helPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                                h+lPlarikki+k + edvkmis eaP+++skacelfi elt rsw+ + e krrtl+k d+a+av  tdifdflv  v 
  Pav_sc0000667.1_g560.1.mk  23 HSLPLARIKKIMKkSGEDVKMISGEAPIVFSKACELFIEELTRRSWMTTLEGKRRTLHKDDVASAVMGTDIFDFLVSLVS 102
                                99**********73579**********************************************************98875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    
MRQPGRYSGF MMCGGISGRT GPHSLPLARI KKIMKKSGED VKMISGEAPI VFSKACELFI  60
EELTRRSWMT TLEGKRRTLH KDDVASAVMG TDIFDFLVSL VSDSCHSEDI TPEEKEALGG  120
S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.32e-35NF-YC family protein