PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000675.1_g100.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 124aa MW: 13894.2 Da PI: 4.6368

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000675.1_g100.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	43.1	1.2e-13	2	42	60	100
DUF260 60 slvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 s+ yeA+ar++dP+yG+v++i++lqqq+ +l+a+la lk++ Pav_sc0000675.1_g100.1.br 2 SISYEAQARIQDPIYGCVSHIFALQQQVVNLQAQLAFLKDQ 42 9***********************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence
MSISYEAQAR IQDPIYGCVS HIFALQQQVV NLQAQLAFLK DQAAQSFVNG SNPNQAAQSW 60 NYENGIMNSN NSVNGSYENL VNIPEEGTSH SMSSFGMQTN YNRQWGFQDA DELQSVVSSY 120 IHHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	3e-11	LBD family protein