PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000679.1_g150.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 196aa    MW: 21848 Da    PI: 8.859
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000679.1_g150.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.23.8e-106485324
                               S---SGGGGTS--TTTTT-SS- CS
                    zf-CCCH  3 telCrffartGtCkyGdrCkFa 24
                               +++C f+++tG+Ck+G++CkF+
  Pav_sc0000679.1_g150.1.br 64 EPPCAFHLKTGQCKFGATCKFH 85
                               79*******************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MSSHLYGYGA AQSAAAALSS VYTSRALTDL TLRCLSECDP STSATDDHSQ TNADVFALPE  60
RPSEPPCAFH LKTGQCKFGA TCKFHPPKDI LIPSAEQENT IRETGTTIQL EGTGFAVKPP  120
VSFSPALSFN SKELPVRPGE PDCLFYLIGS CKYWVTWARL KRKKRHYVTI LLLRPPRTQR  180
SRQYLLGEEK PTWRIL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.13e-28C3H family protein