PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000689.1_g070.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 234aa    MW: 26605.9 Da    PI: 6.337
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000689.1_g070.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.26.6e-39291281100
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                                aCaaCk++rrkCa+dC+lap fp++++++f n+hklFG+sn++k++k+l+++++e+am+++++++++ra+dPv G++++i++lq
  Pav_sc0000689.1_g070.1.mk  29 ACAACKYQRRKCAPDCILAPFFPHDRQRQFLNAHKLFGVSNITKIIKHLNPSDKEEAMRTIIFQSDIRANDPVGGCYRIIRELQ 112
                                7*********************************************************************************** PP

                     DUF260  85 qqleqlkaelallkee 100
                                + +e  kael+ + ++
  Pav_sc0000689.1_g070.1.mk 113 RLIEYNKAELDIVLHQ 128
                                **********988776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MSSISNHTHH HIPTPTTPTT TKGNGNAQAC AACKYQRRKC APDCILAPFF PHDRQRQFLN  60
AHKLFGVSNI TKIIKHLNPS DKEEAMRTII FQSDIRANDP VGGCYRIIRE LQRLIEYNKA  120
ELDIVLHQLA ICRAQAQQQQ QQQNTIQIPE VGDQNSCDQL INMDPLSLYN NQHGGGMNAN  180
DCEDLKPFVE IPCDDDQRNG EVRFQPEDIG DHQQRESWVR FEGKVLPLEL EAPT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.15e-56LBD family protein