PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000691.1_g570.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 258aa    MW: 29155 Da    PI: 10.5536
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000691.1_g570.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.41.9e-11341061591
                                -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                         B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                                +l+lp  f+++ ++kk  + + +   +   sW v+l  +++ ++   +++GW+ Fv+ +gL+ g++vvF+++g++ f+
  Pav_sc0000691.1_g570.1.mk  34 ILSLPVAFCSSLSEKK-LD-KAV-IKSCLGSWCVRL--SRSVDGvLSFEEGWEVFVNHHGLNLGEMVVFEHKGKMVFN 106
                                699******9997554.33.344.4556689*****..777777699***********************98877765 PP
2B356.16.9e-18150235385
                                EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                         B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvv 81 
                                +++++s+ + + + +++p kfa+++g++ ++   ++l+d+sgrsW + ++      ++s r+  +kGW +F +an+Lk gD+++
  Pav_sc0000691.1_g570.1.mk 150 TTMSKSHGNPLhAYMTIPAKFARTNGIVAAS--RIILKDPSGRSWPLIISKwermGRRSHRIAARKGWYKFYEANKLKNGDVCI 231
                                566666665554789***********99777..6***************7745444444458899******************* PP

                                EEE- CS
                         B3  82 Fkld 85 
                                F l+
  Pav_sc0000691.1_g570.1.mk 232 FNLK 235
                                *976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MDKLRPMPFM ARPSLLCKPM LRWIEAIGPF RLYILSLPVA FCSSLSEKKL DKAVIKSCLG  60
SWCVRLSRSV DGVLSFEEGW EVFVNHHGLN LGEMVVFEHK GKMVFNAVAY ESLGNEKEYE  120
LQSDKHPHDY KGKRTLKGTA SSTPRTLFST TMSKSHGNPL HAYMTIPAKF ARTNGIVAAS  180
RIILKDPSGR SWPLIISKWE RMGRRSHRIA ARKGWYKFYE ANKLKNGDVC IFNLKPVSSK  240
SGSKSTRVLE VQITRCGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.11e-16B3 family protein