PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000702.1_g400.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 863aa MW: 96299.8 Da PI: 5.8958

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000702.1_g400.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.2e-12	283	329	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + E+ RR ++N ++ L++llP++ +K + a+i+ +A++YIk+L Pav_sc0000702.1_g400.1.mk 283 TKHFATEKHRRVQLNGKYTALKDLLPHP-----TKSDRASIVGEAIDYIKEL 329 78************************.....9**************98 PP
2	HLH	35.9	1.4e-11	669	710	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 E++RR ++N +++ Lr l+P++ +K + a+i++ A++YIk+L Pav_sc0000702.1_g400.1.mk 669 TEKQRRVQLNGKYSALRNLVPNP-----TKTDRASIVRYAINYIKEL 710 6********************.....9**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 863 aa Download sequence
MYEDTIGCNF DPNSMPESAE SVLSLNPLPP PPPPQVLMPS PSETHNNNNN SFAVAENLRL 60 SMEELSYPHQ QDHHAAMEIE LQNELGFNPY STNTDQNNHS SHLVSFEQQT NWDNIHGVHD 120 QMQQQLQDGA NGAYPPTPDL LNLFSLPRCS PSSVLQNSSI TFTNPNPKSS NFPNSLGFLG 180 DVHGGIDTPP GTASSVLYDP LFHLNLPPQP PLFREMLQSL PHGYSLPGSR NGSLFSSGGD 240 EREGIGGGVY SDGINNGRQF ENGVLEFSRE MGSIGRGRDV KGTKHFATEK HRRVQLNGKY 300 TALKDLLPHP TKSDRASIVG EAIDYIKELL RTVEELKLLV EKKRCGRERS KRRRTEQDGG 360 AGDDESCNMK PLGDPHDQSY NNGSLRSSWL QRKSKDTEVD IRIIDDEVTI KLVQRKKINL 420 LLYVSKLLDE LQLDLHHVAG GHIGNSYSFL FNTKMYEGSS LYASAIAQKL IEVLDIQYAA 480 VPPTNNTVCC NFDPNSMPES AETVLNVNVN VNPLPPPPQV LMPSPSETHK NNNNFAVAKN 540 LRLSIEEISY PHQQDHHAAM EIELQNELGF NPYSTNTDQN NNSSHLLSFE KQTNWDTAGG 600 VDAPPGTVSS VFYDPLFHLN LPPQPPLHRE LYQPLFSSGG DEREGIGEEG FTQMGLIMGD 660 NLRMGCWITE KQRRVQLNGK YSALRNLVPN PTKTDRASIV RYAINYIKEL LRLVEELKLL 720 VEKKRCGRGR HQTEQDGGAG DGESCKPLGD PHDQSYNNGS LRSSWLQRKY KDTVVDVHII 780 DDEVTIKLVQ KKKINLLLYM SKLLDELQLD LHHAAGEHIG NSYSFLFNTK MHEGSFLYTK 840 AIGDKLIEVL DGQYAAVPPT SSY

Sequence ? help Back to Top

Protein Sequence Length: 863 aa Download sequence

MYEDTIGCNF DPNSMPESAE SVLSLNPLPP PPPPQVLMPS PSETHNNNNN SFAVAENLRL  60
SMEELSYPHQ QDHHAAMEIE LQNELGFNPY STNTDQNNHS SHLVSFEQQT NWDNIHGVHD  120
QMQQQLQDGA NGAYPPTPDL LNLFSLPRCS PSSVLQNSSI TFTNPNPKSS NFPNSLGFLG  180
DVHGGIDTPP GTASSVLYDP LFHLNLPPQP PLFREMLQSL PHGYSLPGSR NGSLFSSGGD  240
EREGIGGGVY SDGINNGRQF ENGVLEFSRE MGSIGRGRDV KGTKHFATEK HRRVQLNGKY  300
TALKDLLPHP TKSDRASIVG EAIDYIKELL RTVEELKLLV EKKRCGRERS KRRRTEQDGG  360
AGDDESCNMK PLGDPHDQSY NNGSLRSSWL QRKSKDTEVD IRIIDDEVTI KLVQRKKINL  420
LLYVSKLLDE LQLDLHHVAG GHIGNSYSFL FNTKMYEGSS LYASAIAQKL IEVLDIQYAA  480
VPPTNNTVCC NFDPNSMPES AETVLNVNVN VNPLPPPPQV LMPSPSETHK NNNNFAVAKN  540
LRLSIEEISY PHQQDHHAAM EIELQNELGF NPYSTNTDQN NNSSHLLSFE KQTNWDTAGG  600
VDAPPGTVSS VFYDPLFHLN LPPQPPLHRE LYQPLFSSGG DEREGIGEEG FTQMGLIMGD  660
NLRMGCWITE KQRRVQLNGK YSALRNLVPN PTKTDRASIV RYAINYIKEL LRLVEELKLL  720
VEKKRCGRGR HQTEQDGGAG DGESCKPLGD PHDQSYNNGS LRSSWLQRKY KDTVVDVHII  780
DDEVTIKLVQ KKKINLLLYM SKLLDELQLD LHHAAGEHIG NSYSFLFNTK MHEGSFLYTK  840
AIGDKLIEVL DGQYAAVPPT SSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	3e-83	bHLH family protein