PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000704.1_g1020.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family YABBY
Protein Properties Length: 188aa    MW: 21226.9 Da    PI: 8.2211
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000704.1_g1020.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY220.64.6e-6861614170
                       YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnv 86 
                                 + ++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+ ++         ++++++ + +n++   
  Pav_sc0000704.1_g1020.1.mk   6 DVATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDV--------QAQNNNYNAQNYRIES 80 
                                 5689********************************************99999998885........4555555555555544 PP

                       YABBY  87 ekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
                                  ++++ ++++++    + + ++v++   v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfg
  Pav_sc0000704.1_g1020.1.mk  81 GSSSKCNKKIAT---RDPTADHVTQERGVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFG 160
                                 444444444444...5566677777788******************************************************9 PP

                       YABBY 170 l 170
                                 l
  Pav_sc0000704.1_g1020.1.mk 161 L 161
                                 7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
MTSCIDVATE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSLS  60
WQDVQAQNNN YNAQNYRIES GSSSKCNKKI ATRDPTADHV TQERGVNRPP EKRQRVPSAY  120
NQFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG LMLETNNQAK VDNDSEKHLM  180
SRAALLNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.19e-88YABBY family protein