PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000704.1_g460.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 807aa MW: 89535.1 Da PI: 7.4865

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000704.1_g460.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.8	2.2e-09	88	112	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC +f G C+ G++C++aHg Pav_sc0000704.1_g460.1.mk 88 YKTRLCVNFKT-GMCRNGENCNYAHG 112 9********.***********8 PP
2	zf-CCCH	27	7.9e-09	151	173	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++lC+ f+ + +C+yGdrC+F H Pav_sc0000704.1_g460.1.mk 151 MKLCKKFYNGEECPYGDRCNFLH 173 689****66********** PP
3	zf-CCCH	40.8	3.6e-13	232	258	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ + tG C++G++C+FaHg+ Pav_sc0000704.1_g460.1.mk 232 WKTKLCNKWETTGKCPFGEKCHFAHGQ 258 8************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 807 aa Download sequence
MNFSDHTQFM PSQTPYAGGS DAVNCWPPFP MSMNNEDQHS QFEQLPSPFK RPRNSEENQS 60 NPMPYPPMNA RMQPPNAPVN KGASNIFYKT RLCVNFKTGM CRNGENCNYA HGIEDIRHPP 120 PNWQELVSVR EEDRPPLSGN WDDDQKIIHR MKLCKKFYNG EECPYGDRCN FLHEDPAKFR 180 DDISRFRENT SISIGTTGPS VVHGSGSNHS EENRLVNTGM DTFRVNMKPV YWKTKLCNKW 240 ETTGKCPFGE KCHFAHGQAE LQVPGGRVEA EVLSSTPIST KPQAGPVNDS STTAMAIQPA 300 SNDEGGQGKK RVLKWKGSKK INRIYADWLD DVPLVQQQNL SSTSSPTSVG FPSLLKNPKP 360 PPNGSMVKLS LLSSSTHLLS FCRKLTVQTL TRRSLCSGST TTMSINLQSH AFAGNPLIPK 420 TPKSSDPFSP TQAYETLKTQ LLDNTHLPSS LSFKVLPFRK GRPLASSTGG TSDSTPNWHL 480 GWISLSECKG LLANSGVELS GESLVYLGSR SGDDVVYWAI DVSGESSVVP ELGSKQLCFV 540 ELRTLMVATD WADARAMGEL AIAGHARALL EWHNISLFCG HCGGKTVSKE AGRRKQCSNE 600 LCRKRVYPRV DPVVIMLVID RENDRVLLSR QSRFVPRMWS CLAGFIEPGE SLEEAVRRET 660 WEETGIEVGE VVYHSSQPWP VGPNSMPCQL MVGFYAYAKS LELNVDKEEL EDAEWHSRED 720 VKKALAYAEY RKAQQTAASK VEQMCKGVEK GQNFSADFNV ESGELAPMFI PGPFAIAHHL 780 ISSWVYQDAG DSVAARLKQP SGSTSNL

Sequence ? help Back to Top

Protein Sequence Length: 807 aa Download sequence

MNFSDHTQFM PSQTPYAGGS DAVNCWPPFP MSMNNEDQHS QFEQLPSPFK RPRNSEENQS  60
NPMPYPPMNA RMQPPNAPVN KGASNIFYKT RLCVNFKTGM CRNGENCNYA HGIEDIRHPP  120
PNWQELVSVR EEDRPPLSGN WDDDQKIIHR MKLCKKFYNG EECPYGDRCN FLHEDPAKFR  180
DDISRFRENT SISIGTTGPS VVHGSGSNHS EENRLVNTGM DTFRVNMKPV YWKTKLCNKW  240
ETTGKCPFGE KCHFAHGQAE LQVPGGRVEA EVLSSTPIST KPQAGPVNDS STTAMAIQPA  300
SNDEGGQGKK RVLKWKGSKK INRIYADWLD DVPLVQQQNL SSTSSPTSVG FPSLLKNPKP  360
PPNGSMVKLS LLSSSTHLLS FCRKLTVQTL TRRSLCSGST TTMSINLQSH AFAGNPLIPK  420
TPKSSDPFSP TQAYETLKTQ LLDNTHLPSS LSFKVLPFRK GRPLASSTGG TSDSTPNWHL  480
GWISLSECKG LLANSGVELS GESLVYLGSR SGDDVVYWAI DVSGESSVVP ELGSKQLCFV  540
ELRTLMVATD WADARAMGEL AIAGHARALL EWHNISLFCG HCGGKTVSKE AGRRKQCSNE  600
LCRKRVYPRV DPVVIMLVID RENDRVLLSR QSRFVPRMWS CLAGFIEPGE SLEEAVRRET  660
WEETGIEVGE VVYHSSQPWP VGPNSMPCQL MVGFYAYAKS LELNVDKEEL EDAEWHSRED  720
VKKALAYAEY RKAQQTAASK VEQMCKGVEK GQNFSADFNV ESGELAPMFI PGPFAIAHHL  780
ISSWVYQDAG DSVAARLKQP SGSTSNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	1e-89	C3H family protein