PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000704.1_g490.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 543aa MW: 61286.2 Da PI: 7.2138

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000704.1_g490.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.9	6.5e-07	86	107	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C f++ G+C+ GdrC+F H+ Pav_sc0000704.1_g490.1.mk 86 VPCYFYFN-GFCNKGDRCSFLHD 107 68****.***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence
MDEDLLKRNT DCVYFLASPL TCKKGADCEF RHSKIARLNP KDCWYWLSGN CLNPTCAFRH 60 PPLDGHGGAP SSESAPSSVS ANKTIVPCYF YFNGFCNKGD RCSFLHDNEG GASTEKSPKT 120 ASACNDTFAL SSENKASAGN DMMPAPRMAH LNPSETASKE TVDTGFQPKE DLNYFEQSVQ 180 RDVPQQSVSP QISVFGDEEA TEIRSDSLPA DSSVHSKSQS CTDQSSDEQA DDLVREEWWE 240 SSPGFDVLVD GKSENLGCED DPECFLTLDG ERRELNSHFL GYDFENPDDY VPVCPPDAEL 300 LYERDVYDSY DFLDNNHMLG NDGKFPGYAK ETMSDAIFSR KRKLMPMELA VYDQDFVDVR 360 DRLRRRRMTD CHSITGLSRR HEALRLFGRS REMPQRHGMG WRVHGRLASE VRNSTYGSLR 420 ENGASSSAGI QRVSLRHSQQ YRPRKHHKER KLAKQKLPSS GVSKKRAPRE KRSAQKSTTF 480 TGPKTLAQIK EEKKKAEENR DHIGIMRHVR RTRVDFQGPK PLNEILKEKG KIADKREGNA 540 GSN

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence

MDEDLLKRNT DCVYFLASPL TCKKGADCEF RHSKIARLNP KDCWYWLSGN CLNPTCAFRH  60
PPLDGHGGAP SSESAPSSVS ANKTIVPCYF YFNGFCNKGD RCSFLHDNEG GASTEKSPKT  120
ASACNDTFAL SSENKASAGN DMMPAPRMAH LNPSETASKE TVDTGFQPKE DLNYFEQSVQ  180
RDVPQQSVSP QISVFGDEEA TEIRSDSLPA DSSVHSKSQS CTDQSSDEQA DDLVREEWWE  240
SSPGFDVLVD GKSENLGCED DPECFLTLDG ERRELNSHFL GYDFENPDDY VPVCPPDAEL  300
LYERDVYDSY DFLDNNHMLG NDGKFPGYAK ETMSDAIFSR KRKLMPMELA VYDQDFVDVR  360
DRLRRRRMTD CHSITGLSRR HEALRLFGRS REMPQRHGMG WRVHGRLASE VRNSTYGSLR  420
ENGASSSAGI QRVSLRHSQQ YRPRKHHKER KLAKQKLPSS GVSKKRAPRE KRSAQKSTTF  480
TGPKTLAQIK EEKKKAEENR DHIGIMRHVR RTRVDFQGPK PLNEILKEKG KIADKREGNA  540
GSN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	361	367	DRLRRRR